Warheads and projectiles do not need to be adjusted at all.
Its actually the building.
In [NAFLAK] and [NASAM], they have NavalTargeting= and LandTargeting=. Most important is LandTargeting=1. Contrary to what the comments say, 1 means "NOT okay." That means that the building will not fire at land units even if its projectile says it can. Setting this to 0 will allow them to shoot at paratroopers.
However, there is a catch (which is probably the reason why WW implemented LandTargeting and NavalTargeting): When enemy ground units shoot at the building, the building may retaliate and shoot back (just once)!
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