Hmm, I'll try explain another way.
Say that I'm going to attach these two boxes which have both ben cut in half. Now the one on the right has that bit extra still on it.
When I overlay them at the same point and weld all the vertices will the red face be one or will it be 2, comprised of the red one and the right ones overhang/extra piece ? Or will it dissapear while welding the vertices ?
This is something I've always wondered.