Hmm. Go the other way. Comment out the Flak Trooper sounds. Then see if the problem still occurs. If it does, give the Flak Trooper back his old sounds, check again.
We need to find out whether this is in fact related to the bug or not. If it is, I fear, it resembles Immune G.I. Bug and cannot be fixed, but only avoided. However, even in that case we need to find out what exactly triggers it to issue a warning.
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